Helpful Resources
Mass Spectrometry and Proteomics Organizations
- American Society for Mass Spectrometry
- Association of Biomolecular Resource Facilities
- Human Proteome Organization (HUPO)
Journals
- Journal of Proteome Research
- Molecular and Cellular Proteomics
- Journal of the American Society for Mass Spectrometry
- Analytical Chemistry
Instrument Vendors
Proteomics data searching tools
- Galaxy-P
- MaxQuant
- Proteome Discoverer (from Planet Orbitrap)
- Compound Discoverer (Metabolomics)
- SearchGUI and Peptide Shaker
Databases, Protein Modification, etc.
Tools
- Venn diagram plotter (also produces lists of shared and unique entries)
- Area-proportional Venn diagram plotter
- In silico protein digestion
- String – Protein network visualization
- STEM – Short Time-series Expression Miner